01 - Preheat oven to 400°F. Line a baking sheet with parchment paper or aluminum foil.
02 - In a medium mixing bowl, combine the chopped chipotle peppers in adobo, honey, olive oil, apple cider vinegar, minced garlic, smoked paprika, kosher salt, and black pepper. Whisk until smooth and well blended.
03 - Pat the chicken thighs dry with paper towels and arrange them skin-side up on the prepared baking sheet.
04 - Brush the chipotle honey glaze generously over each chicken thigh, coating them evenly. Reserve about 2 tablespoons of the glaze for finishing.
05 - Bake the chicken thighs for 30 minutes, until the juices run clear and the skin is golden brown and crispy.
06 - Remove the baking sheet from the oven. Brush the chicken thighs with the reserved glaze, then sprinkle the shredded smoked Gouda evenly over each piece. Return to the oven and bake for an additional 5 minutes, or until the cheese is fully melted and bubbling.
07 - Garnish the chicken thighs with chopped fresh cilantro and serve immediately with lime wedges on the side.